Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Xaut_1007Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; KEGG: mxa:MXAN_4526 polyketide synthase type I. (1974 aa)    
Predicted Functional Partners:
Xaut_1011
PFAM: AMP-dependent synthetase and ligase; Thioesterase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; KEGG: sen:SACE_4285 AMP-dependent synthetase and ligase.
 0.999
Xaut_2785
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: reh:H16_B1685 non-ribosomal peptide synthetase.
 
 0.999
Xaut_1006
PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: ava:Ava_3987 AMP-dependent synthetase and ligase.
 
 0.996
Xaut_1010
PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mva:Mvan_1003 beta-ketoacyl synthase.
 
 
0.996
Xaut_2786
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pmy:Pmen_2870 amino acid adenylation domain.
 0.996
Xaut_3116
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: rpb:RPB_2466 malonyl CoA-acyl carrier protein transacylase.
 
 0.992
Xaut_4075
PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_C1028 putative AMP-dependent synthetase and ligase.
 
 0.992
Xaut_1009
TIGRFAM: methyltransferase FkbM family; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase; KEGG: ana:all2645 peptide synthetase.
 
 0.990
Xaut_0518
PFAM: AMP-dependent synthetase and ligase; KEGG: mes:Meso_1586 AMP-dependent synthetase and ligase.
 
 0.987
Xaut_0425
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pau:PA14_33610 probable non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 0.984
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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