Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Xaut_1024PFAM: Pirin domain protein; KEGG: rpb:RPB_4505 pirin-like protein; Belongs to the pirin family. (232 aa)    
Predicted Functional Partners:
Xaut_1023
TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: rpd:RPD_4352 flavoprotein WrbA.
       0.687
Xaut_1025
PFAM: type III effector Hrp-dependent outers; KEGG: rpd:RPD_1856 type III effector Hrp-dependent outers.
  
    0.424
Xaut_1026
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:pRL120615 putative hydroxypyruvate isomerase; Belongs to the hyi family.
       0.401
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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