Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xaut_1027PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bja:blr2928 oxidoreductase. (330 aa)    
Predicted Functional Partners:
Xaut_1912
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
  
 0.880
Xaut_1025
PFAM: type III effector Hrp-dependent outers; KEGG: rpd:RPD_1856 type III effector Hrp-dependent outers.
 
  
 0.777
Xaut_1026
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:pRL120615 putative hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.669
Xaut_1028
PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4553 major facilitator superfamily MFS_1.
  
    0.648
Xaut_2193
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bra:BRADO3137 methylmalonate-semialdehyde dehydrogenase.
 
 
 0.616
Xaut_1030
PFAM: class II aldolase/adducin family protein; KEGG: sme:SMb20666 hypothetical protein.
 
  
 0.615
Xaut_3248
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: acr:Acry_1791 methylmalonate-semialdehyde dehydrogenase.
 
 
 0.610
Xaut_4296
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mag:amb3583 enoyl-CoA hydratase/carnithine racemase.
 
  
 0.534
Xaut_4229
TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: acr:Acry_2259 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
  0.500
Xaut_1029
PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rle:pRL120618 putative LacI family transcriptional regulator.
   
   0.437
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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