STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1028PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4553 major facilitator superfamily MFS_1. (437 aa)    
Predicted Functional Partners:
Xaut_2517
PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll4423 dihydrodipicolinate synthase; Belongs to the DapA family.
  
  
 0.702
Xaut_1027
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bja:blr2928 oxidoreductase.
  
    0.656
Xaut_1026
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:pRL120615 putative hydroxypyruvate isomerase; Belongs to the hyi family.
 
    0.606
Xaut_4356
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RS01667 putative 4-hydroxybenzoate transporter transmembrane protein.
  
     0.523
Xaut_1137
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B5860 general substrate transporter:major facilitator superfamily MFS_1.
  
  
 0.498
Xaut_2273
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:blr7905 citrate-proton symporter.
  
  
 0.488
Xaut_1029
PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rle:pRL120618 putative LacI family transcriptional regulator.
  
  
 0.484
Xaut_2690
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azo:azo2543 putative 4-hydroxybenzoate transporter protein.
  
    0.481
Xaut_1025
PFAM: type III effector Hrp-dependent outers; KEGG: rpd:RPD_1856 type III effector Hrp-dependent outers.
       0.470
Xaut_1493
KEGG: ppu:PP_3216 hypothetical protein.
  
     0.446
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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