STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1037PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_4327 alpha/beta hydrolase fold. (298 aa)    
Predicted Functional Partners:
Xaut_1036
KEGG: pfl:PFL_4886 hypothetical protein.
 
     0.937
Xaut_1038
KEGG: pfl:PFL_4879 hypothetical protein.
 
     0.935
Xaut_1041
KEGG: aav:Aave_4326 2,3-diketo-5-methylthio-1-phosphopentane phosphatase.
 
     0.923
Xaut_1039
KEGG: pfl:PFL_4878 hypothetical protein.
 
   
 0.917
Xaut_1040
PFAM: aminotransferase class-III; KEGG: pfl:PFL_4884 aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.915
Xaut_1035
KEGG: pfl:PFL_4880 hypothetical protein.
 
     0.872
Xaut_1033
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_4887 sensor histidine kinase.
 
     0.828
Xaut_1031
PFAM: MltA-interacting MipA family protein; KEGG: rpc:RPC_0793 MltA-interacting MipA.
       0.788
Xaut_1034
KEGG: bra:BRADO6277 hypothetical protein.
       0.779
Xaut_1032
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pfl:PFL_4888 sigma-54 dependent DNA-binding response regulator.
       0.778
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.