STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1065PFAM: transposase IS3/IS911 family protein; KEGG: rle:pRL110144 putative transposon/insertion element protein. (88 aa)    
Predicted Functional Partners:
Xaut_1064
PFAM: Integrase catalytic region; KEGG: rpa:RPA3836 integrase, catalytic domain.
   
 0.789
Xaut_1066
Hypothetical protein.
       0.671
Xaut_1042
Hypothetical protein; KEGG: rpa:RPA3836 integrase, catalytic domain.
   
 0.617
Xaut_4005
PFAM: Integrase catalytic region; KEGG: xcv:XCV2351 transposase.
  
 0.573
Xaut_3736
PFAM: Integrase catalytic region; KEGG: rpa:RPA3836 integrase, catalytic domain.
  
 0.528
Xaut_1608
PFAM: Integrase catalytic region; KEGG: rpa:RPA3836 integrase, catalytic domain.
  
 0.506
Xaut_3472
PFAM: Integrase catalytic region; KEGG: rpa:RPA3836 integrase, catalytic domain.
  
 0.506
Xaut_0221
PFAM: Integrase catalytic region; KEGG: rpa:RPA3836 integrase, catalytic domain.
   
 0.470
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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