STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1085KEGG: mlo:mlr2856 nitrate transporter component, nrtA. (415 aa)    
Predicted Functional Partners:
Xaut_1086
PFAM: response regulator receiver; ANTAR domain protein; KEGG: mlo:mlr2855 two-component response regulator.
 
  
 0.953
Xaut_2502
TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1758 nitrate transport ATP-binding subunits C and D.
  
 0.949
Xaut_2619
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2114 putative nitrate transport system ATP-binding protein.
  
 0.912
Xaut_1082
TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_2266 regulatory proteins, AsnC/Lrp.
  
 0.868
Xaut_1083
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_4170 nitrate ABC transporter, permease component.
  
 0.867
Xaut_1078
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sme:SMb20986 putative nitrate reductase, large subunit protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.863
Xaut_1080
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mes:Meso_1451 nitrite reductase (NAD(P)H), large subunit.
 
  
 0.833
Xaut_2497
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpb:RPB_1752 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.806
Xaut_2506
PFAM: response regulator receiver; ANTAR domain protein; KEGG: bbt:BBta_4139 putative two-component response regulator.
 
  
 0.794
Xaut_1079
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: mlo:mlr2863 nitrite reductase small subunit.
 
  
 0.775
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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