STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1152PFAM: protein of unknown function DUF540; KEGG: mes:Meso_4022 protein of unknown function DUF540. (237 aa)    
Predicted Functional Partners:
Xaut_4383
KEGG: bra:BRADO4419 hypothetical protein.
  
     0.593
Xaut_1453
KEGG: bja:blr1191 hypothetical protein.
  
     0.572
Xaut_1474
KEGG: mlo:mll1302 hypothetical protein.
  
     0.570
Xaut_1151
KEGG: bch:Bcen2424_1947 hypothetical protein.
  
    0.561
Xaut_0297
PFAM: UspA domain protein; KEGG: atc:AGR_C_613 hypothetical protein.
  
     0.536
Xaut_1851
KEGG: rpc:RPC_2187 hypothetical protein.
  
     0.536
Xaut_4293
PFAM: RDD domain containing protein; KEGG: bbt:BBta_4656 putative membrane protein of unknown function.
  
     0.529
Xaut_3794
PFAM: Domain of unknown function DUF1849; KEGG: bbt:BBta_4750 putative exported protein of unknown function.
  
     0.517
Xaut_1655
PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_1932 tetratricopeptide TPR_2.
 
     0.501
Xaut_1882
KEGG: rpa:RPA4739 hypothetical protein.
  
     0.495
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.