STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1225PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA1408 putative ABC transporter protein. (274 aa)    
Predicted Functional Partners:
Xaut_1226
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_2184 binding-protein-dependent transport systems inner membrane component.
  
 0.963
Xaut_1222
TIGRFAM: urea amidolyase related protein; Urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: rle:pRL90293 putative UreA amidolyase.
 
   
 0.946
Xaut_1224
KEGG: rpe:RPE_1217 hypothetical protein.
 
   
 0.936
Xaut_1223
KEGG: ret:RHE_PE00119 hypothetical protein.
 
   
 0.932
Xaut_1227
PFAM: NLPA lipoprotein; KEGG: rpd:RPD_2183 putative taurine transport system protein.
 
  
 0.903
Xaut_1221
KEGG: ret:RHE_PE00117 putative amidase protein.
 
   
 0.901
Xaut_4705
TIGRFAM: Allophanate hydrolase; PFAM: Amidase; KEGG: bbt:BBta_0724 putative glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A).
 
   
 0.689
Xaut_3201
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.661
Xaut_1084
KEGG: mag:amb0537 ABC-type nitrate/sulfonate/bicarbonate transport systems.
 
  
 0.558
Xaut_1085
KEGG: mlo:mlr2856 nitrate transporter component, nrtA.
 
  
 0.542
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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