STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1272PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: atc:AGR_L_1740 hypothetical protein. (551 aa)    
Predicted Functional Partners:
Xaut_1273
PFAM: DoxX family protein; KEGG: reu:Reut_B4847 DoxX.
 
     0.898
Xaut_1274
PFAM: Amidohydrolase 3; KEGG: reu:Reut_B4849 conserved hypothetical protein PA2699.
 
     0.837
Xaut_1275
PFAM: protein of unknown function DUF1427; KEGG: rpb:RPB_0187 protein of unknown function DUF1427.
 
     0.798
Xaut_1277
PFAM: isochorismatase hydrolase; KEGG: sme:SMa1821 hypothetical protein.
 
   
 0.753
Xaut_1276
PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_C6920 alpha/beta hydrolase.
 
     0.542
Xaut_1271
PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_0827 general substrate transporter:major facilitator superfamily MFS_1.
  
    0.487
Xaut_1716
KEGG: rpd:RPD_0970 hypothetical protein.
  
     0.468
Xaut_4613
PFAM: DoxX family protein; KEGG: bxe:Bxe_A1142 hypothetical protein.
 
     0.417
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.