STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1295Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bra:BRADO0452 putative bifunctional protein: class I glutamine amidotransferase-like (N-terminal), transcriptional regulator protein AraC/XylS family (C-terminal). (317 aa)    
Predicted Functional Partners:
Xaut_1294
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_3264 putative oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.731
Xaut_0983
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bra:BRADO2690 putative transcriptional regulatory protein, AraC family.
 
 
 0.686
Xaut_2683
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcb:XC_0367 PobR regulator.
 
 
 0.512
Xaut_4186
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rle:RL4704 putative glyoxalase family protein.
 
    0.482
Xaut_2696
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bja:bll3668 transcriptional regulatory protein.
 
 
 0.446
Xaut_2380
PFAM: Helix-turn-helix type 11 domain protein; KEGG: sme:SMc02902 putative transcription regulator protein.
  
     0.444
Xaut_3612
KEGG: mes:Meso_0210 putative prophage repressor.
   
 
 0.439
Xaut_1279
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B2379 transcriptional regulator, AraC family.
 
 
0.410
Xaut_0594
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sil:SPO2948 transcriptional regulator, AraC family.
 
 
 0.409
Xaut_0954
PFAM: protein of unknown function DUF1470; KEGG: bpe:BP3097 hypothetical protein.
  
   
 0.408
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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