STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1428PFAM: protein of unknown function DUF861 cupin_3; KEGG: pst:PSPTO_0091 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Xaut_1429
PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_0192 major facilitator superfamily MFS_1.
       0.773
Xaut_1430
Hypothetical protein.
       0.536
Xaut_1427
KEGG: rpd:RPD_1259 hypothetical protein.
       0.512
Xaut_0887
PFAM: glutamine synthetase catalytic region; KEGG: mlo:mll5148 probable glutamine synthetase.
 
     0.437
dadA
D-amino-acid dehydrogenase; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
 
    0.435
Xaut_1785
KEGG: pde:Pden_2355 putative ABC transporter periplasmic solute-binding protein.
  
    0.415
Xaut_0024
KEGG: bja:blr6192 hypothetical protein.
  
     0.405
Xaut_0028
KEGG: bbt:BBta_5945 putative exported protein of unknown function.
  
    0.405
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.