STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1431PFAM: protein of unknown function UPF0118; KEGG: bra:BRADO5979 conserved hypothetical protein; putative membrane protein, membrane transport protein. (606 aa)    
Predicted Functional Partners:
Xaut_1430
Hypothetical protein.
       0.513
Xaut_3345
KEGG: nha:Nham_4274 putative transcriptional regulator, CopG family.
  
     0.506
Xaut_2310
TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: xcb:XC_0142 trehalose synthase.
  
     0.431
Xaut_3218
PFAM: protein of unknown function DUF892; KEGG: rpe:RPE_1491 protein of unknown function DUF892.
  
     0.423
Xaut_1628
PFAM: major facilitator superfamily MFS_1; KEGG: rpd:RPD_4227 major facilitator superfamily MFS_1.
  
   
 0.402
Xaut_4350
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
    0.402
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.