STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1514PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: rpa:RPA4460 putative flavocytochrome c sulfide dehydrogenase, flavoprotein subunit. (421 aa)    
Predicted Functional Partners:
Xaut_1516
Cytochrome c553-like protein; KEGG: rpa:RPA4461 possible cytochrome subunit of sulfide dehydrogenase.
 
 
 
 0.990
Xaut_2498
FAD-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; Fe-S cluster domain protein; KEGG: rpe:RPE_1259 FAD-binding domain protein.
  
 0.917
Xaut_1397
PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rpc:RPC_4013 nitrite and sulphite reductase 4Fe-4S region.
  
 0.916
Xaut_3395
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: eba:ebA3193 putative oxidoreductase, FAD-binding.
   
 0.912
Xaut_0075
TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rpa:RPA0557 cysteine synthase, cytosolic O-acetylserine(thiol)lyase.
    
 0.909
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
  
 
 0.909
Xaut_4677
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rpc:RPC_2553 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
    
 0.909
Xaut_1517
KEGG: rpa:RPA4463 possible cytochrome.
 
   
 0.888
Xaut_1518
PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rpe:RPE_3072 oxidoreductase, molybdopterin binding.
 
 
 
 0.881
Xaut_1520
PFAM: Sulphur oxidation protein SoxZ; KEGG: rpb:RPB_4370 putative sulfur oxidation protein SoxZ.
 
   
 0.881
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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