STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1524KEGG: rpa:RPA4471 hypothetical protein. (194 aa)    
Predicted Functional Partners:
Xaut_1526
KEGG: rpd:RPD_4261 hypothetical protein.
 
     0.896
Xaut_1528
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rpe:RPE_3083 protein of unknown function DUF395, YeeE/YedE.
 
     0.859
Xaut_1521
KEGG: rpe:RPE_3075 hypothetical protein.
 
   
 0.815
Xaut_1520
PFAM: Sulphur oxidation protein SoxZ; KEGG: rpb:RPB_4370 putative sulfur oxidation protein SoxZ.
 
   
 0.805
Xaut_1522
Conserved hypothetical protein; C-type monoheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation.
 
     0.796
Xaut_1519
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: rpb:RPB_4369 twin-arginine translocation pathway signal; Belongs to the 5'-nucleotidase family.
 
   
 0.792
Xaut_1517
KEGG: rpa:RPA4463 possible cytochrome.
 
     0.778
Xaut_1518
PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rpe:RPE_3072 oxidoreductase, molybdopterin binding.
 
     0.772
Xaut_1515
PFAM: Domain of unknown function DUF1791; KEGG: aae:aq_1119 hypothetical protein.
 
     0.749
Xaut_1514
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: rpa:RPA4460 putative flavocytochrome c sulfide dehydrogenase, flavoprotein subunit.
 
     0.745
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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