STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1627PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mpt:Mpe_A2627 putative formaldehyde-activating enzyme. (179 aa)    
Predicted Functional Partners:
Xaut_1787
PFAM: Methylene-tetrahydromethanopterin dehydrogenase; KEGG: mfa:Mfla_1660 methylene tetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase, putative.
  
  
 0.980
ffsA
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
  
 0.978
Xaut_1781
PFAM: Pyrrolo-quinoline quinone; KEGG: rpe:RPE_0851 pyrrolo-quinoline quinone.
  
  
 0.929
Xaut_4686
PFAM: Pyrrolo-quinoline quinone; KEGG: sme:SMb20173 putative methanol dehydrogenase protein, large subunit.
  
  
 0.927
Xaut_1365
PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mca:MCA2866 formaldehyde-activating enzyme.
  
  
0.924
Xaut_0032
PFAM: Formaldehyde-activating enzyme (Fae); KEGG: bxe:Bxe_B2436 formaldehyde-activating enzyme.
  
  
0.923
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
     
 0.909
glyA-2
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
     
 0.909
Xaut_4700
TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: bbt:BBta_1949 sarcosine oxidase, beta subunit.
     
  0.900
Xaut_4701
PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: rpb:RPB_1142 sarcosine oxidase, delta subunit, heterotetrameric.
     
  0.900
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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