Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Xaut_1663HflC protein; HflC and HflK could regulate a protease. (300 aa)    
Predicted Functional Partners:
Xaut_1664
HflK protein; HflC and HflK could encode or regulate a protease.
 
 0.991
Xaut_3384
HflK protein; HflC and HflK could encode or regulate a protease.
 
0.904
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.778
Xaut_1662
KEGG: mlo:msl1453 hypothetical protein.
     
 0.750
Xaut_1661
TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bbt:BBta_6094 putative serine protease do-like precursor; Belongs to the peptidase S1C family.
 
 
 0.588
yidC
60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
 
 0.525
Xaut_1881
PFAM: protein of unknown function DUF107; KEGG: nwi:Nwi_0930 protein of unknown function DUF107.
 
 
 0.508
Xaut_2203
PFAM: peptidase M16 domain protein; KEGG: bra:BRADO6071 putative Zn-dependent protease.
  
 0.482
Xaut_4379
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpe:RPE_2592 PpiC-type peptidyl-prolyl cis-trans isomerase.
 
    0.481
Xaut_2204
PFAM: peptidase M16 domain protein; KEGG: bbt:BBta_1713 putative Zn-dependent protease; Belongs to the peptidase M16 family.
  
 0.471
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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