STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1784PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO5473 putative ABC transporter (permease protein). (253 aa)    
Predicted Functional Partners:
Xaut_1785
KEGG: pde:Pden_2355 putative ABC transporter periplasmic solute-binding protein.
 
  
 0.942
Xaut_1783
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr6201 ABC transporter ATP-binding protein.
 
  
 0.913
Xaut_1781
PFAM: Pyrrolo-quinoline quinone; KEGG: rpe:RPE_0851 pyrrolo-quinoline quinone.
 
     0.785
Xaut_1782
PFAM: beta-lactamase domain protein; KEGG: bja:blr6196 hypothetical protein.
 
     0.784
Xaut_0028
KEGG: bbt:BBta_5945 putative exported protein of unknown function.
 
     0.772
Xaut_0025
PFAM: ABC-2 type transporter; KEGG: rsp:RSP_2587 ABC multidrug efflux transporter, inner membrane subunit.
 
     0.771
Xaut_0027
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pde:Pden_0027 40-residue YVTN family beta-propeller repeat protein.
 
     0.762
Xaut_1777
PFAM: Sulphur oxidation protein SoxZ; KEGG: rpe:RPE_0849 hypothetical protein.
 
     0.750
Xaut_1778
KEGG: rpe:RPE_0854 hypothetical protein.
 
   
 0.709
Xaut_4686
PFAM: Pyrrolo-quinoline quinone; KEGG: sme:SMb20173 putative methanol dehydrogenase protein, large subunit.
  
     0.700
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.