STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1796KEGG: mca:MCA2860 formylmethanofuran dehydrogenase. (440 aa)    
Predicted Functional Partners:
Xaut_1795
PFAM: Amidohydrolase 3; KEGG: mca:MCA2859 formylmethanofurane dehydrogenase, A subunit, putative.
 
 0.999
Xaut_1793
PFAM: glutamate synthase alpha subunit domain protein; KEGG: mpt:Mpe_A2626 formylmethanofuran dehydrogenase.
 
 
 0.998
ffsA
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
 
 0.998
Xaut_0477
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bov:BOV_A0049 glutamate synthase, large subunit.
  
 
 0.835
Xaut_4696
KEGG: gbe:GbCGDNIH1_2112 glutamate synthase family protein.
  
 
 0.835
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
   
 0.827
Xaut_3533
PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: mpt:Mpe_A2611 ATP:dephospho-CoA triphosphoribosyl transferase.
 
     0.802
Xaut_3535
TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mca:MCA2861 kinase, GHMP family, putative.
 
     0.802
Xaut_4099
KEGG: bxe:Bxe_B2455 hypothetical protein.
 
     0.801
Xaut_3531
PFAM: histidine biosynthesis protein; KEGG: gbe:GbCGDNIH1_0769 phosphoribosylformimino-5-aminoimidazole carboxamide isomerase family protein; Belongs to the HisA/HisF family.
 
     0.799
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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