Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1900KEGG: atc:AGR_C_3508 hypothetical protein. (132 aa)    
Predicted Functional Partners:
Xaut_1901
PFAM: MOSC domain containing protein; KEGG: bbt:BBta_1194 hypothetical protein.
       0.653
Xaut_3812
KEGG: mes:Meso_2756 capsule polysaccharide export protein-like.
  
     0.501
Xaut_2419
KEGG: atc:AGR_L_572 hypothetical protein.
  
     0.488
Xaut_1899
Pyrimidine 5'-nucleotidase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpa:RPA0627 putative haloacid dehalogenase superfamily hydrolase.
       0.480
Xaut_3819
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rsq:Rsph17025_3997 hypothetical protein.
  
     0.470
Xaut_2277
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: bam:Bamb_4364 outer membrane autotransporter barrel domain.
  
     0.469
Xaut_3817
KEGG: mes:Meso_2756 capsule polysaccharide export protein-like.
  
     0.425
Xaut_1898
KEGG: bbt:BBta_5735 hypothetical protein.
       0.413
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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