STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1973PFAM: ThiJ/PfpI domain protein; KEGG: bte:BTH_II0514 DJ-1/PfpI family protein. (230 aa)    
Predicted Functional Partners:
Xaut_1974
Citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; KEGG: bja:bll0499 citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
       0.757
Xaut_1972
KEGG: bov:BOV_A0825 hypothetical protein.
       0.631
Xaut_3423
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sme:SMb20415 putative oxidoreductase protein.
 
    0.468
Xaut_1975
PFAM: protein of unknown function DUF459; KEGG: mlo:mlr3028 hypothetical protein.
       0.467
Xaut_1279
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B2379 transcriptional regulator, AraC family.
 
 
 0.444
Xaut_3612
KEGG: mes:Meso_0210 putative prophage repressor.
   
 
 0.439
Xaut_4186
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rle:RL4704 putative glyoxalase family protein.
 
    0.415
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.403
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.