STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1983PFAM: peptidase S16 lon domain protein; KEGG: bra:BRADO0320 putative Lon family ATP-dependent protease. (223 aa)    
Predicted Functional Partners:
Xaut_1982
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bja:blr0594 thioredoxin.
 
  
 0.787
Xaut_0997
FHA domain containing protein; PFAM: Forkhead-associated protein; peptidase S1 and S6 chymotrypsin/Hap; KEGG: ava:Ava_0307 FHA domain containing protein.
    
 0.641
Xaut_0780
KEGG: xcv:XCVd0083 UBA/ThiF-type NAD/FAD binding fold containing protein.
    
 0.591
Xaut_4128
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rpa:RPA0086 putative molybdenum cofactor biosynthesis protein.
    
 0.591
Xaut_2303
PFAM: metallophosphoesterase; KEGG: swi:Swit_4995 metallophosphoesterase.
    
 0.553
Xaut_2302
PFAM: SMC domain protein; KEGG: swi:Swit_4996 hypothetical protein.
    
 0.462
Xaut_3717
Hypothetical protein; KEGG: nwi:Nwi_0797 phage-related minor tail protein.
    
 0.462
Xaut_1471
KEGG: rpd:RPD_0794 putative mRNA 3-end processing factor.
     
 0.437
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 
 0.436
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.