Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xaut_1990TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mes:Meso_3222 drug resistance transporter, Bcr/CflA subfamily. (452 aa)    
Predicted Functional Partners:
Xaut_1989
PFAM: regulatory protein MarR; KEGG: mes:Meso_3221 transcriptional regulator, MarR family.
 
   
 0.849
Xaut_0838
PFAM: major facilitator superfamily MFS_1; KEGG: rpb:RPB_3195 major facilitator superfamily MFS_1.
  
   
 0.553
Xaut_1991
KEGG: bbt:BBta_6142 putative exported protein of unknown function.
       0.497
Xaut_4758
PFAM: major facilitator superfamily MFS_1; KEGG: rpd:RPD_2819 major facilitator superfamily MFS_1.
  
   
 0.483
Xaut_1992
PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_6143 putative outer membrane protein.
       0.476
Xaut_1988
Peptidase M50; PFAM: CBS domain containing protein; peptidase M50; KEGG: sme:SMb20925 hypothetical protein.
       0.467
Xaut_2813
TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: nha:Nham_0160 transcriptional regulator, AraC family.
 
  
 0.403
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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