STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1994SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: dar:Daro_0699 low molecular weight phosphotyrosine protein phosphatase. (154 aa)    
Predicted Functional Partners:
Xaut_3552
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rle:RL3662 putative succinoglycan biosynthesis transport protein.
  
 
 0.583
Xaut_0875
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mes:Meso_0325 protein tyrosine phosphatase.
  
     0.521
Xaut_3958
PFAM: low molecular weight phosphotyrosine protein phosphatase; SMART: regulatory protein ArsR; KEGG: nha:Nham_4431 transcriptional regulator, ArsR family.
 
  
 0.451
Xaut_0383
Beta-ketoacyl synthase; PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: nfa:nfa30250 putative polyketide synthase.
  
 
 0.429
Xaut_1007
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; KEGG: mxa:MXAN_4526 polyketide synthase type I.
  
 
 0.429
Xaut_3805
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sme:SMc02273 fatty acid synthase transmembrane protein.
  
 
 0.429
Xaut_1920
PFAM: Activator of Hsp90 ATPase 1 family protein; SMART: regulatory protein ArsR; KEGG: aau:AAur_1126 putative transcriptional regulator, ArsR family.
 
  
 0.426
Xaut_1960
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rru:Rru_A3715 lipopolysaccharide biosynthesis.
 
 
 0.417
Xaut_0877
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: nwi:Nwi_3126 arsenite efflux pump ACR3.
  
  
 0.410
Xaut_3959
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: nwi:Nwi_3126 arsenite efflux pump ACR3.
  
  
 0.410
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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