Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xaut_1995PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bra:BRADO3109 putative UDP-glucose 4-epimerase. (325 aa)    
Predicted Functional Partners:
Xaut_3525
PFAM: peptidase M16 domain protein; KEGG: rpc:RPC_4796 peptidase M16-like; Belongs to the peptidase M16 family.
 
 
   0.840
Xaut_1998
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpa:RPA3472 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
 
 
 0.764
Xaut_2039
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpc:RPC_3165 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    0.763
Xaut_1996
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_B2957 putative short-chain dehydrogenase/reductase.
 
 
   0.707
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.574
Xaut_1030
PFAM: class II aldolase/adducin family protein; KEGG: sme:SMb20666 hypothetical protein.
 
 
 0.560
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.558
Xaut_1997
PFAM: GCN5-related N-acetyltransferase; KEGG: sus:Acid_7165 GCN5-related N-acetyltransferase.
 
    0.558
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.555
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.548
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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