Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xaut_1997PFAM: GCN5-related N-acetyltransferase; KEGG: sus:Acid_7165 GCN5-related N-acetyltransferase. (252 aa)    
Predicted Functional Partners:
Xaut_0311
PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH00270 probable acetyltransferase protein.
 
 
 0.901
Xaut_1998
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpa:RPA3472 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.757
Xaut_1996
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_B2957 putative short-chain dehydrogenase/reductase.
       0.649
Xaut_1995
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bra:BRADO3109 putative UDP-glucose 4-epimerase.
 
    0.558
Xaut_1999
Membrane protein-like protein; KEGG: rpc:RPC_1595 low temperature requirement A.
       0.486
Xaut_2000
PFAM: transposase IS4 family protein; KEGG: sil:SPO0489 ISSpo2, transposase.
       0.486
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.462
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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