STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2000PFAM: transposase IS4 family protein; KEGG: sil:SPO0489 ISSpo2, transposase. (451 aa)    
Predicted Functional Partners:
Xaut_1999
Membrane protein-like protein; KEGG: rpc:RPC_1595 low temperature requirement A.
       0.773
Xaut_2001
PFAM: low temperature requirement A; KEGG: rpe:RPE_1617 low temperature requirement A.
       0.608
Xaut_1998
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpa:RPA3472 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.496
Xaut_1997
PFAM: GCN5-related N-acetyltransferase; KEGG: sus:Acid_7165 GCN5-related N-acetyltransferase.
       0.486
Xaut_3007
KEGG: mes:Meso_2330 hypothetical protein.
  
     0.473
Xaut_1996
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_B2957 putative short-chain dehydrogenase/reductase.
       0.417
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.