STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2001PFAM: low temperature requirement A; KEGG: rpe:RPE_1617 low temperature requirement A. (251 aa)    
Predicted Functional Partners:
Xaut_1999
Membrane protein-like protein; KEGG: rpc:RPC_1595 low temperature requirement A.
     0.990
Xaut_2000
PFAM: transposase IS4 family protein; KEGG: sil:SPO0489 ISSpo2, transposase.
       0.608
Xaut_2447
KEGG: nha:Nham_1256 hypothetical protein.
  
     0.465
Xaut_2002
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: swi:Swit_1492 anti-sigma-factor antagonist.
       0.455
Xaut_1998
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpa:RPA3472 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.402
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.