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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2003PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsq:Rsph17025_2318 ABC transporter related. (266 aa)    
Predicted Functional Partners:
Xaut_2004
PFAM: cobalt transport protein; KEGG: rru:Rru_A3687 cobalt transport protein.
 
 0.999
Xaut_2005
PFAM: BioY protein; KEGG: sit:TM1040_3659 BioY protein.
 
 
 0.997
Xaut_4329
PFAM: BioY protein; KEGG: mlo:mlr7429 bioY protein.
 
 
 0.967
Xaut_0420
KEGG: rru:Rru_A0458 hypothetical protein.
 
 
 0.885
Xaut_2006
PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1049 AMP-dependent synthetase and ligase.
 
     0.800
Xaut_2007
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: rpc:RPC_1050 acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
     0.792
Xaut_2008
KEGG: sme:SMc03155 hypothetical protein.
       0.757
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.632
Xaut_3280
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sme:SMc03188 probable precorrin-6Y C5,15-methyltransferase (decarboxylating) protein.
  
  
 0.561
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
  
 0.530
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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