STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2006PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1049 AMP-dependent synthetase and ligase. (487 aa)    
Predicted Functional Partners:
Xaut_1010
PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mva:Mvan_1003 beta-ketoacyl synthase.
 
 0.890
Xaut_3335
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ade:Adeh_3217 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.889
Xaut_1008
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mxa:MXAN_4528 polyketide synthase.
 
 0.878
Xaut_1007
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; KEGG: mxa:MXAN_4526 polyketide synthase type I.
 
 0.873
Xaut_1859
PFAM: AMP-dependent synthetase and ligase; KEGG: pfo:Pfl_2870 AMP-dependent synthetase and ligase.
 
 
 0.859
Xaut_4440
PFAM: AMP-dependent synthetase and ligase; KEGG: rru:Rru_A1312 AMP-dependent synthetase and ligase.
  
  
 
0.857
Xaut_1861
PFAM: AMP-dependent synthetase and ligase; KEGG: rpe:RPE_4227 AMP-dependent synthetase and ligase.
 
 
 0.855
Xaut_1006
PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: ava:Ava_3987 AMP-dependent synthetase and ligase.
  
  
 
0.854
Xaut_2007
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: rpc:RPC_1050 acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.830
Xaut_2005
PFAM: BioY protein; KEGG: sit:TM1040_3659 BioY protein.
 
    0.826
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.