STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2014KEGG: rpe:RPE_0035 phosphoesterase, PA-phosphatase related. (281 aa)    
Predicted Functional Partners:
argG
PFAM: argininosuccinate synthase; KEGG: nwi:Nwi_2803 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
      0.818
Xaut_2015
PFAM: DSBA oxidoreductase; KEGG: eba:ebA2541 2-hydroxychromene-2-carboxylate isomerase family protein.
 
     0.632
Xaut_2552
KEGG: rpa:RPA4361 hypothetical protein.
  
     0.601
Xaut_4201
KEGG: rpd:RPD_2821 hypothetical protein.
  
     0.593
Xaut_4553
PFAM: glycosyl transferase family 2; KEGG: nha:Nham_2075 glycosyl transferase, family 2.
    0.585
Xaut_3584
KEGG: rpd:RPD_3048 hypothetical protein.
  
     0.555
Xaut_4552
PFAM: phosphoesterase PA-phosphatase related; KEGG: rpd:RPD_2554 phosphoesterase, PA-phosphatase related.
 
  
 0.554
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
 0.552
Xaut_4340
Hypothetical protein; KEGG: rpc:RPC_2684 lipopolysaccharide biosynthesis.
  
     0.526
Xaut_4196
KEGG: rpb:RPB_3001 hypothetical protein.
  
     0.512
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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