Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xaut_2018PFAM: Methyltransferase type 11; KEGG: bra:BRADO0568 conserved hypothetical protein; putative SAM-dependent methyltransferase. (255 aa)    
Predicted Functional Partners:
Xaut_1459
PFAM: DNA polymerase III chi subunit HolC; KEGG: rpa:RPA3059 DNA polymerase III chi subunit.
  
     0.700
Xaut_1408
PFAM: protein of unknown function DUF1491; KEGG: rpa:RPA1860 hypothetical protein.
 
     0.675
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
   
 0.651
Xaut_3836
PFAM: protein of unknown function DUF88; KEGG: nwi:Nwi_1924 protein of unknown function DUF88.
  
     0.650
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.649
Xaut_2020
PFAM: protein of unknown function DUF985; KEGG: rpc:RPC_0507 protein of unknown function DUF985.
       0.626
Xaut_2559
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpa:RPA4367 sensor histidine kinase.
 
     0.611
atpF1
H+transporting two-sector ATPase B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   
 0.602
Xaut_1475
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: nwi:Nwi_2706 metal dependent phosphohydrolase.
  
     0.585
Xaut_1815
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bra:BRADO0046 conserved hypothetical protein; putative transcriptional regulatory protein HTH type.
  
     0.583
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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