STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2075TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_C_2569 putative amino acid transport system permease proetin. (219 aa)    
Predicted Functional Partners:
Xaut_2076
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_C_2571 probable ATP-binding component of ABC transporter.
 0.997
Xaut_2073
PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PF00162 probable amino acid ABC transporter, substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 0.991
Xaut_2074
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_C_2567 amino acid ABC transporter, permease protein.
 
  
 
0.981
Xaut_1599
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_4668 ABC transporter related.
 
 0.904
Xaut_2441
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_381 glutamine ABC transporter, ATP-binding protein (glnQ).
 
 0.902
Xaut_0176
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A2756 ABC-type transporter, ATPase component: PAAT family.
 
 0.900
Xaut_4549
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02121 probable general L-amino acid transport ATP-binding ABC transporter protein.
 
 0.893
Xaut_0177
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: reh:H16_A2757 ABC-type transporter, periplasmic component: PAAT family.
 
 0.840
Xaut_1598
PFAM: extracellular solute-binding protein family 3; KEGG: pde:Pden_4667 extracellular solute-binding protein, family 3.
 
 0.840
Xaut_2438
PFAM: extracellular solute-binding protein family 3; KEGG: atc:AGR_L_385 probable binding protein component of ABC transporter.
 
 0.840
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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