STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2110KEGG: bja:bll6018 probable general secretion pathway protein H precursor. (163 aa)    
Predicted Functional Partners:
Xaut_2113
KEGG: bra:BRADO1299 putative general secretion pathway protein K.
 
 
 0.983
Xaut_2114
PFAM: Fimbrial assembly family protein; KEGG: bja:bll6015 putative general secretory pathway protein L.
 
  
 0.956
Xaut_2107
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_3009 type II secretion system protein E.
 
 
 0.955
Xaut_2108
PFAM: type II secretion system protein; KEGG: nha:Nham_0740 type II secretion system protein.
 
  
 0.951
Xaut_2106
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: nha:Nham_0742 type II and III secretion system protein.
 
  
 0.877
Xaut_2109
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: bra:BRADO6346 general secretion pathway protein G.
 
     0.856
Xaut_2112
KEGG: nha:Nham_0736 putative general secretion pathway protein J.
       0.799
Xaut_2116
KEGG: rpc:RPC_2998 hypothetical protein.
     
 0.791
Xaut_2111
KEGG: nha:Nham_0737 general secretion pathway protein I.
       0.789
Xaut_2115
KEGG: nha:Nham_0733 putative general secretion pathway protein M.
     
 0.789
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.