STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2136TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mpt:Mpe_A1565 hypothetical protein. (405 aa)    
Predicted Functional Partners:
Xaut_3523
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpe:RPE_2940 poly(R)-hydroxyalkanoic acid synthase, class I.
 
  
 0.970
Xaut_2009
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pde:Pden_5103 poly-beta-hydroxybutyrate polymerase domain protein.
 
  
 0.964
Xaut_0368
PFAM: PHB de-polymerase domain protein; KEGG: acr:Acry_2759 polyhydroxyalkanoate depolymerase, intracellular.
  
  
 
0.920
Xaut_0304
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rpb:RPB_0063 polyhydroxyalkanoate depolymerase, intracellular.
  
  
 
0.905
Xaut_3109
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: nha:Nham_3687 polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.602
Xaut_2137
PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: rle:RL3389 putative transmembrane protein.
       0.515
Xaut_3107
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr3725 acetoacetyl CoA reductase.
  
   
 0.447
Xaut_1887
TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll3632 D-beta-hydroxybutyrate dehydrogenase.
  
   
 0.427
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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