Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Xaut_2162KEGG: rpc:RPC_4882 hypothetical protein. (64 aa)    
Predicted Functional Partners:
Xaut_2161
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: nwi:Nwi_0752 cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
  
    0.712
Xaut_2163
PFAM: TspO/MBR family protein; KEGG: acr:Acry_0012 TspO and MBR like protein.
       0.695
Xaut_2160
PFAM: Rhomboid family protein; KEGG: rle:RL4318 putative transmembrane rhomboid family protein.
       0.493
Xaut_2164
KEGG: ret:RHE_CH01335 hypothetical protein.
       0.486
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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