STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2184Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mgm:Mmc1_2496 two component, sigma54 specific, transcriptional regulator, fis family. (497 aa)    
Predicted Functional Partners:
Xaut_0344
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: azo:azo3810 hydrogen uptake histidine-kinase.
 
 0.975
Xaut_2183
TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: rpe:RPE_1242 hydrogenase accessory protein HypB.
  
  
 0.856
rpoN
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.783
Xaut_2179
PFAM: HupH hydrogenase expression protein; KEGG: pde:Pden_3104 HupH hydrogenase expression protein.
 
  
 0.776
Xaut_2180
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rsp:RSP_0503 HupJ, contains rubredoxin domain.
 
  
 0.768
Xaut_2177
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: bja:bsl6938 hydrogenase expression/formation protein.
 
   0.741
Xaut_2181
KEGG: azo:azo3798 putative hydrogenase expression/formation protein HupK.
 
   
 0.740
Xaut_2178
PFAM: hydrogenase-1 expression HyaE; KEGG: pde:Pden_3103 hydrogenase-1 expression HyaE.
 
  
 0.710
Xaut_2176
TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52 hydrogen uptake protein; KEGG: rsh:Rsph17029_2150 hydrogenase expression/formation protein.
 
   
 0.686
Xaut_0343
KEGG: bvi:Bcep1808_5948 NADH ubiquinone oxidoreductase, 20 kDa subunit.
  
   
 0.630
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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