STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2273PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:blr7905 citrate-proton symporter. (440 aa)    
Predicted Functional Partners:
Xaut_2275
TIGRFAM: CitB domain protein; KEGG: bbt:BBta_4212 putative citrate utilization protein B (CitB).
     
 0.799
Xaut_2274
TIGRFAM: precorrin 3B synthase CobZ; PFAM: monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bja:blr2320 hypothetical protein.
  
    0.785
Xaut_2276
PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_6283 putative ABC transporter, periplasmic substrate-binding protein.
 
   
 0.707
Xaut_4356
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RS01667 putative 4-hydroxybenzoate transporter transmembrane protein.
  
  
 0.522
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
   
    0.499
Xaut_1137
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B5860 general substrate transporter:major facilitator superfamily MFS_1.
  
   
 0.499
Xaut_1028
PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_4553 major facilitator superfamily MFS_1.
  
  
 0.488
rpmJ
TIGRFAM: ribosomal protein L36; KEGG: nha:Nham_1214 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.454
Xaut_2926
PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA0865 probable transport protein.
  
   
 0.444
Xaut_2690
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azo:azo2543 putative 4-hydroxybenzoate transporter protein.
  
  
 0.438
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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