STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2278TIGRFAM: TonB family protein; KEGG: nha:Nham_0730 TonB-like. (247 aa)    
Predicted Functional Partners:
Xaut_2279
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nha:Nham_0729 biopolymer transport protein ExbD/TolR.
  
 
 0.918
Xaut_2280
TIGRFAM: TonB-system energizer ExbB type-2; PFAM: MotA/TolQ/ExbB proton channel; KEGG: nha:Nham_0728 MotA/TolQ/ExbB proton channel.
  
 
 0.902
Xaut_2779
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: rpc:RPC_1976 TonB-dependent siderophore receptor.
  
 
 0.848
Xaut_2281
PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: nha:Nham_0727 hemolysin activation/secretion protein-like.
  
  
 0.797
Xaut_0422
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpc:RPC_4299 TonB-dependent receptor.
  
 
 0.689
Xaut_1786
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpe:RPE_2818 TonB-dependent receptor.
   
 
 0.682
Xaut_3058
TIGRFAM: Biopolymer transport TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpe:RPE_4709 biopolymer transport protein ExbD/TolR.
  
 
 0.653
Xaut_4274
TIGRFAM: TonB system transport protein ExbD type-1; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bov:BOV_1613 TonB system transport protein ExbD.
  
 
 0.653
Xaut_2784
PFAM: ferric iron reductase; KEGG: pmy:Pmen_2861 ferric iron reductase.
  
  
 0.639
Xaut_4191
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpc:RPC_1973 TonB-dependent haem/haemoglobin receptor.
  
 
 0.608
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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