STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2311Hypothetical protein; KEGG: sit:TM1040_3386 malate/L-lactate dehydrogenase. (151 aa)    
Predicted Functional Partners:
Xaut_2312
PFAM: membrane protein of uknown function UCP014873; KEGG: mlo:mlr6724 hypothetical protein.
       0.773
Xaut_0861
PFAM: peptidase M19 renal dipeptidase; KEGG: pde:Pden_1105 peptidase M19, renal dipeptidase.
  
    0.772
Xaut_3906
PFAM: Bile acid:sodium symporter; KEGG: mag:amb1661 predicted Na+-dependent transporter.
  
    0.759
Xaut_2310
TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: xcb:XC_0142 trehalose synthase.
       0.493
Xaut_1360
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.479
Xaut_3143
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding; KEGG: bra:BRADO3367 putative bifunctional enzyme: malic oxidoreductase (N-terminal); phosphotransacetylase (C-terminal).
     
 0.413
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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