STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2351PFAM: YdjC family protein; KEGG: nha:Nham_3190 YdjC-like protein. (282 aa)    
Predicted Functional Partners:
Xaut_2352
PFAM: glycosyl transferase family 2; KEGG: rpb:RPB_1844 glycosyl transferase, family 2.
 
  
 0.904
Xaut_3318
KEGG: bja:bll3066 hypothetical protein.
 
  
 0.693
Xaut_4551
PFAM: glycosyl transferase family 39; KEGG: rpe:RPE_2724 glycosyl transferase, family 39.
 
  
 0.533
Xaut_4196
KEGG: rpb:RPB_3001 hypothetical protein.
  
     0.494
Xaut_2749
PFAM: GtrA family protein; KEGG: azo:azo0751 conserved hypothetical membrane protein.
 
     0.481
Xaut_2014
KEGG: rpe:RPE_0035 phosphoesterase, PA-phosphatase related.
  
     0.437
Xaut_2353
PFAM: UspA domain protein; KEGG: rpd:RPD_0348 UspA.
       0.436
Xaut_0845
PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_3543 GCN5-related N-acetyltransferase.
  
     0.421
Xaut_1409
KEGG: bbt:BBta_3054 hypothetical protein.
  
     0.421
Xaut_1324
PFAM: polysaccharide deacetylase; KEGG: sfu:Sfum_0601 polysaccharide deacetylase.
     
 0.415
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.