STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2452TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO5685 putative accessory protein to ABC-type macrolide transport protein MacB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (428 aa)    
Predicted Functional Partners:
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 0.993
Xaut_2451
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rpb:RPB_2240 RND efflux system, outer membrane lipoprotein, NodT.
 
 0.886
Xaut_0319
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A0868 AcrB/AcrD/AcrF family protein.
 
 0.619
Xaut_2360
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_0712 hydrophobe/amphiphile efflux-1 HAE1.
 
 0.596
Xaut_0382
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rle:RL3602 putative efflux RND transporter protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.582
Xaut_2454
KEGG: bra:BRADO5245 hypothetical protein; putative exported protein.
       0.563
Xaut_0514
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rle:RL4275 putative Acr/RND family efflux transmembrane transporter.
 
 0.531
Xaut_4169
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: nha:Nham_3601 RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.530
Xaut_4353
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bja:bll5080 AcrB/AcrD/AcrF family protein.
 
 0.504
Xaut_4352
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:bll5081 putative multidrug resistance protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.466
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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