STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2467Porin; PFAM: porin; KEGG: bms:BR1622 outer membrane protein Omp31. (250 aa)    
Predicted Functional Partners:
Xaut_1636
KEGG: bja:bll5549 hypothetical protein.
  
     0.756
Xaut_4297
KEGG: rpc:RPC_2652 hypothetical protein.
  
     0.742
Xaut_3824
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.729
Xaut_2033
PFAM: protein of unknown function DUF1150; KEGG: bbt:BBta_0116 hypothetical protein.
  
     0.709
Xaut_0036
KEGG: nha:Nham_1124 hypothetical protein.
 
   
 0.698
Xaut_2286
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.695
Xaut_3823
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.691
Xaut_4123
KEGG: rpd:RPD_1641 hypothetical protein.
  
     0.675
Xaut_3489
KEGG: rpd:RPD_3670 flagellar export FliJ.
  
     0.662
Xaut_4649
PFAM: Invasion associated locus B family protein; KEGG: bja:bll1169 hypothetical protein.
 
     0.659
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.