STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2474PFAM: Extensin family protein; KEGG: rpb:RPB_1166 extensin-like protein. (361 aa)    
Predicted Functional Partners:
Xaut_2473
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bov:BOV_0302 hydrolase, haloacid dehalogenase-like family.
       0.550
Xaut_0392
PFAM: protein of unknown function DUF1007; KEGG: bra:BRADO6257 conserved hypothetical protein; putative signal peptide.
  
     0.525
Xaut_0072
KEGG: rpc:RPC_1776 hypothetical protein.
  
     0.521
Xaut_2731
PFAM: ribonuclease T2; KEGG: bja:blr7466 ribonuclease; Belongs to the RNase T2 family.
  
     0.505
Xaut_2472
KEGG: nwi:Nwi_0614 hypothetical protein.
       0.496
Xaut_3850
KEGG: nha:Nham_0406 hypothetical protein.
  
     0.476
Xaut_3704
PFAM: protein of unknown function DUF264; KEGG: pde:Pden_2902 protein of unknown function DUF264.
  
     0.431
Xaut_0391
PFAM: high-affinity nickel-transporter; KEGG: bja:bll7754 hypothetical protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.422
Xaut_3147
PFAM: protein of unknown function DUF264; KEGG: nwi:Nwi_1160 protein of unknown function DUF264.
  
     0.410
Xaut_4535
PFAM: Carotene hydroxylase; KEGG: psa:PST_3871 beta-carotene hydroxylase.
  
     0.405
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.