STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2575PFAM: flavin reductase domain protein FMN-binding; KEGG: jan:Jann_2341 flavin reductase-like, FMN-binding. (169 aa)    
Predicted Functional Partners:
Xaut_4058
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bbt:BBta_2105 putative N-isopropylammelide isopropylaminohydrolase.
    
  0.901
Xaut_2574
PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: rha:RHA1_ro01782 probable 4-hydroxyphenylacetic hydroxylase.
 
  
 0.864
Xaut_2576
PFAM: Endoribonuclease L-PSP; KEGG: bvi:Bcep1808_5677 endoribonuclease L-PSP.
  
  
 0.806
Xaut_2573
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5671 transcriptional regulator, LysR family.
      0.698
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
  
 
 0.595
ssuD-2
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
  
 
 0.595
Xaut_3463
Alkanesulfonate monooxygenase; PFAM: luciferase family protein; KEGG: bra:BRADO4269 putative alkanesulfonate monooxygenase (FMNH2-dependent aliphatic sulfonate monooxygenase).
  
 
 0.595
Xaut_2810
TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: ajs:Ajs_3177 cob(II)yrinic acid a,c-diamide reductase.
  
 
 0.576
Xaut_0299
PFAM: nitroreductase; KEGG: bur:Bcep18194_B1060 nitroreductase.
  
  
 0.559
Xaut_1843
TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: nha:Nham_3161 riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
  0.517
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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