STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2612PFAM: OsmC family protein; KEGG: bra:BRADO2768 conserved hypothetical protein; putative OsmC/ohr family protein. (208 aa)    
Predicted Functional Partners:
Xaut_2613
KEGG: bra:BRADO2769 putative acyl-CoA dehydrogenase family protein.
 
    0.894
Xaut_2611
PFAM: regulatory protein TetR; KEGG: bbt:BBta_5419 putative transcriptional regulatory protein, TetR family.
 
    0.752
Xaut_2614
PFAM: Rhodanese domain protein; KEGG: bra:BRADO2770 putative thiosulfate sulfurtransferase (rhodanese-like protein).
 
     0.698
cynS
Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
 
     0.666
Xaut_2617
KEGG: bja:bll5734 ABC transporter nitrate-binding protein.
 
     0.605
Xaut_2618
TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO2772 putative nitrate ABC transporter (permease protein) (NtrB-like protein).
 
     0.585
Xaut_2619
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2114 putative nitrate transport system ATP-binding protein.
 
     0.482
Xaut_2615
PFAM: DSBA oxidoreductase; KEGG: reu:Reut_A2829 DsbA oxidoreductase.
 
     0.446
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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