STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2698PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr3672 oxidoreductase. (267 aa)    
Predicted Functional Partners:
Xaut_2700
PFAM: NIPSNAP family containing protein; KEGG: bja:bll3657 hypothetical protein.
 
     0.743
Xaut_2699
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll3656 hypothetical protein.
 
  
 0.738
Xaut_2697
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pna:Pnap_2719 NAD-dependent epimerase/dehydratase.
  
   0.677
Xaut_2701
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bja:bll3658 hypothetical protein.
  
  
 0.661
Xaut_2702
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: bja:bll3659 putative dehydrogenase.
  
  
 0.661
Xaut_2703
PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: bja:blr3858 putative shikimate 5-dehydrogenase.
 
  
 0.560
Xaut_4298
PFAM: O-methyltransferase family 3; KEGG: mlo:mlr0279 O-methyltransferase.
  
 
 0.469
Xaut_2704
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3661 ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.432
Xaut_2705
PFAM: inner-membrane translocator; KEGG: bja:bll3662 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.432
Xaut_0383
Beta-ketoacyl synthase; PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: nfa:nfa30250 putative polyketide synthase.
  
 
 0.414
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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