STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2727PFAM: aminotransferase class-III; KEGG: aha:AHA_4139 aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (478 aa)    
Predicted Functional Partners:
Xaut_3492
TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mes:Meso_1162 putative agmatinase; Belongs to the arginase family.
 
 
  0.959
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.955
Xaut_0640
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rpe:RPE_3166 ornithine decarboxylase.
    
 0.908
Xaut_1357
PFAM: aldehyde dehydrogenase; KEGG: bra:BRADO5849 NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.907
Xaut_2140
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mlo:mll2974 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.907
Xaut_2733
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mes:Meso_2027 Orn/DAP/Arg decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.907
Xaut_3504
PFAM: aldehyde dehydrogenase; KEGG: bra:BRADO2102 aldehyde dehydrogenase family 7 member A1 homolog; Belongs to the aldehyde dehydrogenase family.
 
 
 0.907
Xaut_2119
PFAM: Spermine synthase; KEGG: bra:BRADO6330 putative spermine/spermidine synthase family protein.
    
 0.903
Xaut_1939
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: glutamine synthetase family protein.
  
 0.837
Xaut_1940
PFAM: FAD dependent oxidoreductase; KEGG: rsh:Rsph17029_2032 FAD dependent oxidoreductase.
 
  
 0.774
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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