STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2754Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpc:RPC_3839 transcriptional regulator, LysR family. (296 aa)    
Predicted Functional Partners:
Xaut_0738
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_1510 transcriptional regulator, LysR family.
  
     0.678
Xaut_2322
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00818 putative hydrogen peroxide-inducible genes activator (morphology and auto-aggregation control protein); Belongs to the LysR transcriptional regulatory family.
  
     0.676
Xaut_1043
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB4297 LysR-family transcriptional regulator.
  
     0.656
Xaut_0630
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:pRL90211 putative LysR family transcriptional regulator.
  
     0.629
Xaut_4222
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_3398 oxidative stress transcriptional regulator.
  
     0.612
Xaut_2965
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMa1893 putative LysR-family transcriptional activator.
  
     0.608
Xaut_4359
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A1965 benzoate operon transcriptional regulator,LysR-family.
  
     0.607
Xaut_4564
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr5093 transcriptional regulatory protein.
  
     0.607
Xaut_1168
PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: transcriptional regulator, LysR family.
  
     0.595
Xaut_3989
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family.
  
     0.569
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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