STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2779TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: rpc:RPC_1976 TonB-dependent siderophore receptor. (863 aa)    
Predicted Functional Partners:
Xaut_2780
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypn:YPN_0698 ferrichrome transport ATP-binding protein FhuC.
 
  
 0.941
Xaut_2778
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rsh:Rsph17029_3602 putative FecR.
 
  
 0.929
Xaut_2782
PFAM: periplasmic binding protein; KEGG: csa:Csal_1050 periplasmic binding protein.
  
 0.890
Xaut_2783
PFAM: transport system permease protein; KEGG: csa:Csal_1049 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.859
Xaut_2278
TIGRFAM: TonB family protein; KEGG: nha:Nham_0730 TonB-like.
  
 
 0.848
Xaut_3057
Putative TolA; KEGG: rpe:RPE_4708 putative TolA.
  
 
 0.848
Xaut_4275
TIGRFAM: TonB family protein; KEGG: nwi:Nwi_2038 TonB like protein.
  
 
 0.848
Xaut_2781
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ppu:PP_4244 ferric regulator PfrI; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.838
Xaut_2784
PFAM: ferric iron reductase; KEGG: pmy:Pmen_2861 ferric iron reductase.
 
  
 0.836
Xaut_2777
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rsh:Rsph17029_3603 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.715
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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